MLOC_28543 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3590270.7392410.4881130.620944
LEAShoots from the seedlings (10 cm shoot stage)00.1968570.3241510.31395
INF1Young developing inflorescences (5mm)1.011281.326311.497211.10507
INF2Developing inflorescences (1-1.5 cm)1.053570.9745661.306691.5372
ROORoots from the seedlings (10 cm shoot stage)0.4051810.8264650.7590540.965548
NODDeveloping tillers at six leaf stage, 3rd internode0.300510.608770.879042.2916
CAR5Developing grain, bracts removed (5 DPA)0.8813890.593650.3626090.793304
CAR15Developing grain, bracts removed (15 DPA)0.2281680.1187870.1702880.473624



CDS Structure of MLOC_28543






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28543.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28543.1CUST_4092_PI427708083AvailableAvailablecontig_192809 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g44160.2 +3 1e-32 91 52/91 (57%) 13112.m04666 protein oxidoreductase, putative, expressed
TAIR PP10 AT5G39940.1 +3 6e-29 89 51/120 (43%) FAD/NAD(P)-binding oxidoreductase family protein | chr5:15987649-15990561 FORWARD LENGTH=480