MLOC_28414 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.624343.653542.837192.47725
LEAShoots from the seedlings (10 cm shoot stage)2.0711.199191.38611.28091
INF1Young developing inflorescences (5mm)5.818875.392275.420184.04754
INF2Developing inflorescences (1-1.5 cm)3.577024.105413.421344.06039
ROORoots from the seedlings (10 cm shoot stage)0.8559611.607870.7460751.43002
NODDeveloping tillers at six leaf stage, 3rd internode0.3951460.6403911.189692.37587
CAR5Developing grain, bracts removed (5 DPA)1.992921.726172.111991.72633
CAR15Developing grain, bracts removed (15 DPA)0.7630180.5168450.1390591.09781



CDS Structure of MLOC_28414






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28414.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28414.1CUST_11951_PI427708083AvailableAvailablecontig_191562 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g12780.1 -1 2e-31 131 60/64 (94%) 13106.m01404 protein OsDegp10 - Putative Deg protease homologue, expressed
TAIR PP10 AT5G40200.1 -1 5e-27 116 54/64 (84%) | Symbols: DegP9 | DegP protease 9 | chr5:16070402-16073101 FORWARD LENGTH=592