MLOC_28407 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.02849350.1008090.1418880.0966026
LEAShoots from the seedlings (10 cm shoot stage)0.2510690.3279380.1295860.194039
INF1Young developing inflorescences (5mm)0.1303460.2153960.1637030.150173
INF2Developing inflorescences (1-1.5 cm)0.2086640.2775780.3720850.304599
ROORoots from the seedlings (10 cm shoot stage)0.05225280.2351870.2269490.247316
NODDeveloping tillers at six leaf stage, 3rd internode0.03793190.09973040.02177620.248108
CAR5Developing grain, bracts removed (5 DPA)0.4904370.1689480.2896830.303522
CAR15Developing grain, bracts removed (15 DPA)0.5481310.3375570.5724921.13553



CDS Structure of MLOC_28407






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28407.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28407.1CUST_10571_PI427708080AvailableAvailablecontig_191532 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g02490.1 -1 8e-89 177 105/296 (35%) 13107.m00173 protein retrotransposon protein, putative, unclassified
TAIR PP10None-----