MLOC_28404 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5262163.104972.017811.77961
LEAShoots from the seedlings (10 cm shoot stage)3.625873.759771.867192.17837
INF1Young developing inflorescences (5mm)6.175797.043048.311845.88731
INF2Developing inflorescences (1-1.5 cm)13.65899.9043512.414712.4701
ROORoots from the seedlings (10 cm shoot stage)0.6088231.698981.574541.46856
NODDeveloping tillers at six leaf stage, 3rd internode1.049452.018773.384555.15627
CAR5Developing grain, bracts removed (5 DPA)6.391289.538558.240887.1652
CAR15Developing grain, bracts removed (15 DPA)3.589632.817513.816167.55505



CDS Structure of MLOC_28404






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28404.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28404.2CUST_4077_PI427708083AvailableAvailablecontig_191507 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g51790.2 -1 3e-105 334 176/266 (66%) 13105.m05601 protein RecF/RecN/SMC N terminal domain containing protein, expressed
TAIR PP10 AT5G15920.1 -1 4e-81 267 141/264 (53%) | Symbols: SMC5 | structural maintenance of chromosomes 5 | chr5:5196210-5199559 FORWARD LENGTH=1053