MLOC_28388 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4507390.1357540.379850.368112
LEAShoots from the seedlings (10 cm shoot stage)1.151270.4945310.2263610.597893
INF1Young developing inflorescences (5mm)0.5379731.223551.237541.04287
INF2Developing inflorescences (1-1.5 cm)0.2463961.057760.982190.993558
ROORoots from the seedlings (10 cm shoot stage)0.2621890.320290.4530690.54925
NODDeveloping tillers at six leaf stage, 3rd internode0.7817320.6969160.1804312.39315
CAR5Developing grain, bracts removed (5 DPA)0.3012971.246921.884261.31883
CAR15Developing grain, bracts removed (15 DPA)0.5501530.4462060.4144111.27265



CDS Structure of MLOC_28388






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28388.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28388.1CUST_4073_PI427708083AvailableAvailablecontig_191313 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g07320.1 -3 6e-75 228 106/122 (87%) 13109.m00577 protein ethanol tolerance protein GEKO1, putative, expressed
TAIR PP10 AT2G03800.1 -3 3e-58 186 83/120 (69%) | Symbols: GEK1 | D-aminoacyl-tRNA deacylases | chr2:1156782-1158695 FORWARD LENGTH=317