MLOC_28316 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains796.669649.383770.011841.235
LEAShoots from the seedlings (10 cm shoot stage)417.089344.974354.629356.998
INF1Young developing inflorescences (5mm)171.572182.852169.699169.486
INF2Developing inflorescences (1-1.5 cm)142.675156.999174.172195.981
ROORoots from the seedlings (10 cm shoot stage)891.199596.004841.948972.084
NODDeveloping tillers at six leaf stage, 3rd internode1198.85429.16342.7831563.33
CAR5Developing grain, bracts removed (5 DPA)269.899300.952260.762318.866
CAR15Developing grain, bracts removed (15 DPA)49.660253.688544.5224135.671



CDS Structure of MLOC_28316






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28316.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252359.1NoneNoneNoneNone
MLOC_28316.1CUST_2089_PI427708080AvailableAvailablecontig_190838 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g51270.2 -2 9e-28 105 97/110 (88%) 13104.m05222 protein vacuolar ATPase G subunit, putative, expressed
TAIR PP10 AT3G01390.2 -2 4e-23 92 45/59 (76%) | Symbols: VMA10, AVMA10 | vacuolar membrane ATPase 10 | chr3:150265-150922 REVERSE LENGTH=110