MLOC_28304 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8563110.82089.3334212.4166
LEAShoots from the seedlings (10 cm shoot stage)4.870064.494852.948774.9638
INF1Young developing inflorescences (5mm)11.180312.06112.508413.4411
INF2Developing inflorescences (1-1.5 cm)15.841210.338610.313417.244
ROORoots from the seedlings (10 cm shoot stage)4.518135.174568.3516410.1241
NODDeveloping tillers at six leaf stage, 3rd internode5.380593.68951.9590215.1603
CAR5Developing grain, bracts removed (5 DPA)14.464611.285912.999317.1917
CAR15Developing grain, bracts removed (15 DPA)11.78256.142310.160227.6489



CDS Structure of MLOC_28304






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28304.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28304.1CUST_4060_PI427708083AvailableAvailablecontig_1907587 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g04110.2 -2 5e-27 105 49/51 (96%) 13109.m00335 protein coatomer alpha subunit, putative, expressed
TAIR PP10 AT1G62020.1 -2 1e-25 100 45/51 (88%) Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216