MLOC_28275 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.67627.809897.541464.93802
LEAShoots from the seedlings (10 cm shoot stage)6.2119511.65099.531364.76397
INF1Young developing inflorescences (5mm)10.808113.185416.05076.68731
INF2Developing inflorescences (1-1.5 cm)12.2912.990613.61389.93973
ROORoots from the seedlings (10 cm shoot stage)2.545065.226575.176313.49089
NODDeveloping tillers at six leaf stage, 3rd internode3.156893.888515.835259.40308
CAR5Developing grain, bracts removed (5 DPA)6.127346.076366.646264.11921
CAR15Developing grain, bracts removed (15 DPA)4.084564.226215.426366.36349



CDS Structure of MLOC_28275






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28275.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28275.1CUST_11946_PI427708083AvailableAvailablecontig_1905107 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g12780.1 +2 3e-26 110 52/62 (84%) 13106.m01404 protein OsDegp10 - Putative Deg protease homologue, expressed
TAIR PP10 AT5G40200.1 +2 4e-23 100 47/62 (76%) | Symbols: DegP9 | DegP protease 9 | chr5:16070402-16073101 FORWARD LENGTH=592