MLOC_28234 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains54.168743.087338.784742.2032
LEAShoots from the seedlings (10 cm shoot stage)40.425825.026536.589827.0047
INF1Young developing inflorescences (5mm)26.377312.773424.368916.7007
INF2Developing inflorescences (1-1.5 cm)16.654116.497821.204818.3544
ROORoots from the seedlings (10 cm shoot stage)111.48459.151959.385670.1508
NODDeveloping tillers at six leaf stage, 3rd internode49.386248.683149.187137.088
CAR5Developing grain, bracts removed (5 DPA)21.783323.350723.548220.8339
CAR15Developing grain, bracts removed (15 DPA)8.747157.044078.6999917.4439



CDS Structure of MLOC_28234






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28234.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28234.1CUST_17625_PI427708080AvailableAvailablecontig_190236 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g40360.2 +2 0.0 696 345/397 (87%) 13106.m04194 protein OsFBL30 - F-box domain and LRR containing protein, expressed
TAIR PP10 AT2G25490.1 +2 8e-124 385 194/398 (49%) | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 | chr2:10848018-10850275 REVERSE LENGTH=628