MLOC_28211 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.520022.088121.844542.0254
LEAShoots from the seedlings (10 cm shoot stage)2.641692.78762.468682.01933
INF1Young developing inflorescences (5mm)3.515273.868764.41192.81007
INF2Developing inflorescences (1-1.5 cm)2.423033.318552.644732.86223
ROORoots from the seedlings (10 cm shoot stage)1.503611.81221.615791.76001
NODDeveloping tillers at six leaf stage, 3rd internode1.366721.547741.64524.08067
CAR5Developing grain, bracts removed (5 DPA)1.814371.97381.949061.70703
CAR15Developing grain, bracts removed (15 DPA)0.4446920.1650220.2739180.621432



CDS Structure of MLOC_28211






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28211.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28211.1CUST_11942_PI427708083AvailableAvailablecontig_19 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g49670.2 -1 1e-55 199 102/133 (77%) 13106.m05326 protein pentatricopeptide, putative, expressed
TAIR PP10 AT5G42310.1 -1 9e-27 115 58/112 (52%) Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:16915860-16918238 FORWARD LENGTH=709