MLOC_28197 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2980250.6098461.116360.707925
LEAShoots from the seedlings (10 cm shoot stage)00.1595540.1515280.262485
INF1Young developing inflorescences (5mm)0.8853311.455930.9592221.03659
INF2Developing inflorescences (1-1.5 cm)2.172121.607661.676712.15874
ROORoots from the seedlings (10 cm shoot stage)00.38507301.28962
NODDeveloping tillers at six leaf stage, 3rd internode0.1298440.2673140.3074690.885262
CAR5Developing grain, bracts removed (5 DPA)0.5194120.9607470.9888630.937711
CAR15Developing grain, bracts removed (15 DPA)0.6241560.5092450.3460291.31428



CDS Structure of MLOC_28197






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28197.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28197.1CUST_10546_PI427708080AvailableAvailablecontig_1899359 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g02090.1 -3 9e-15 72 41/89 (46%) 13110.m00108 protein retrotransposon protein, putative, unclassified
TAIR PP10None-----