MLOC_28188 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains01.491531.888192.08672
LEAShoots from the seedlings (10 cm shoot stage)1.634440.549602.13984
INF1Young developing inflorescences (5mm)1.180981.183650.7330321.27863
INF2Developing inflorescences (1-1.5 cm)0.6903621.255120.6456380.995867
ROORoots from the seedlings (10 cm shoot stage)1.901480.64354501.81731
NODDeveloping tillers at six leaf stage, 3rd internode1.073050.6550090.08794341.91624
CAR5Developing grain, bracts removed (5 DPA)0.311900.9855970.717377
CAR15Developing grain, bracts removed (15 DPA)000.4485720.441749



CDS Structure of MLOC_28188






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28188.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28188.1CUST_4048_PI427708083AvailableAvailablecontig_189895 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g71200.1 -3 4e-23 94 45/49 (92%) 13101.m07753 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT1G03457.1 -3 2e-19 83 38/49 (78%) RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:861109-864019 REVERSE LENGTH=429