MLOC_28151 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5163180.4574583.561841.23934
LEAShoots from the seedlings (10 cm shoot stage)2.501500.6878761.65813
INF1Young developing inflorescences (5mm)2.788678.626794.550334.5127
INF2Developing inflorescences (1-1.5 cm)4.762194.214124.903634.97876
ROORoots from the seedlings (10 cm shoot stage)00.9512853.216962.21397
NODDeveloping tillers at six leaf stage, 3rd internode0.3917060.3765831.236331.85972
CAR5Developing grain, bracts removed (5 DPA)1.550962.297651.627011.71154
CAR15Developing grain, bracts removed (15 DPA)0.4591690.48504101.44453



CDS Structure of MLOC_28151






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28151.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28151.1CUST_4044_PI427708083AvailableAvailablecontig_189551 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g62040.2 -1 5e-37 129 62/65 (95%) 13101.m06633 protein ruvB-like, putative, expressed
TAIR PP10 AT5G22330.1 -1 2e-34 122 59/65 (91%) | Symbols: ATTIP49A, RIN1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7391026-7394071 REVERSE LENGTH=458