MLOC_28057 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains144.84597.772397.5957140.733
LEAShoots from the seedlings (10 cm shoot stage)46.82027.6324817.517124.5802
INF1Young developing inflorescences (5mm)359.899294.167347.154382.684
INF2Developing inflorescences (1-1.5 cm)192.054349.45315.683443.612
ROORoots from the seedlings (10 cm shoot stage)107.00682.5307123.074141.974
NODDeveloping tillers at six leaf stage, 3rd internode3.988446.560636.1679620.7246
CAR5Developing grain, bracts removed (5 DPA)82.412492.761774.986108.402
CAR15Developing grain, bracts removed (15 DPA)12.41638.9072110.273831.0644



CDS Structure of MLOC_28057






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28057.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28057.1CUST_4031_PI427708083AvailableAvailablecontig_1887397 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g39410.1 -1 2e-41 135 70/74 (95%) 13110.m03607 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G59970.1 -1 8e-42 135 70/74 (95%) Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103