MLOC_28022 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.2250090.9751580.624525
LEAShoots from the seedlings (10 cm shoot stage)1.078900.3942820.678867
INF1Young developing inflorescences (5mm)1.080350.1964370.4705140.628659
INF2Developing inflorescences (1-1.5 cm)1.604520.9957050.4440761.35227
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.4751230.6349810.7169342.00335
CAR5Developing grain, bracts removed (5 DPA)1.074080.9989220.6565160.973041
CAR15Developing grain, bracts removed (15 DPA)0.74012500.5472061.29504



CDS Structure of MLOC_28022






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_28022.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_28022.1CUST_11937_PI427708083AvailableAvailablecontig_188368 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g19450.2 -2 5e-18 81 39/44 (89%) 13101.m02116 protein ATP-citrate synthase subunit 1, putative, expressed
TAIR PP10 AT3G06650.1 -2 2e-18 81 40/44 (91%) | Symbols: ACLB-1 | ATP-citrate lyase B-1 | chr3:2079247-2082633 REVERSE LENGTH=608