- Predicted Gene MLOC_27993
MLOC_27993 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_27993_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_27993_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 2.82154 | 4.61374 | 5.05653 | 4.04083 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 8.20884 | 6.12715 | 6.74788 | 5.99049 |
INF1 | Young developing inflorescences (5mm) | 12.6931 | 11.492 | 10.3748 | 9.21811 |
INF2 | Developing inflorescences (1-1.5 cm) | 14.5354 | 14.6963 | 13.9365 | 15.0916 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.75556 | 5.13628 | 3.70368 | 5.48984 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.28503 | 3.20341 | 5.04499 | 11.7827 |
CAR5 | Developing grain, bracts removed (5 DPA) | 8.96417 | 8.80136 | 9.60833 | 8.41183 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.84463 | 3.8076 | 3.52802 | 7.8857 |
CDS Structure of MLOC_27993
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_27993.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g15890.1 |
+2 |
0.0 |
1224 |
655/820 (80%) |
13105.m01674 protein SNF2 family N-terminal domain containing protein, expressed |
TAIR PP10 |
AT1G03750.1 |
+2 |
0.0 |
969 |
499/765 (65%) |
| Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD LENGTH=862 |