MLOC_27993 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.821544.613745.056534.04083
LEAShoots from the seedlings (10 cm shoot stage)8.208846.127156.747885.99049
INF1Young developing inflorescences (5mm)12.693111.49210.37489.21811
INF2Developing inflorescences (1-1.5 cm)14.535414.696313.936515.0916
ROORoots from the seedlings (10 cm shoot stage)2.755565.136283.703685.48984
NODDeveloping tillers at six leaf stage, 3rd internode2.285033.203415.0449911.7827
CAR5Developing grain, bracts removed (5 DPA)8.964178.801369.608338.41183
CAR15Developing grain, bracts removed (15 DPA)3.844633.80763.528027.8857



CDS Structure of MLOC_27993






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27993.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27993.2CUST_10530_PI427708080AvailableAvailablecontig_188125 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g15890.1 +2 0.0 1224 655/820 (80%) 13105.m01674 protein SNF2 family N-terminal domain containing protein, expressed
TAIR PP10 AT1G03750.1 +2 0.0 969 499/765 (65%) | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD LENGTH=862