- Predicted Gene MLOC_27961
MLOC_27961 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_27961_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_27961_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 1.35714 | 6.31892 | 5.51181 | 5.65739 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 5.45493 | 6.48175 | 5.56263 | 5.39851 |
INF1 | Young developing inflorescences (5mm) | 35.8242 | 35.3658 | 38.3798 | 33.5554 |
INF2 | Developing inflorescences (1-1.5 cm) | 60.3144 | 52.5685 | 46.4762 | 64.8819 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.61787 | 3.97222 | 2.65656 | 5.03082 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.562789 | 1.21143 | 3.47664 | 5.91468 |
CAR5 | Developing grain, bracts removed (5 DPA) | 12.9425 | 8.64452 | 12.8535 | 12.4157 |
CAR15 | Developing grain, bracts removed (15 DPA) | 6.22476 | 3.59923 | 4.43813 | 12.1455 |
CDS Structure of MLOC_27961
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_27961.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g51790.2 |
-2 |
5e-100 |
318 |
193/265 (73%) |
13105.m05601 protein RecF/RecN/SMC N terminal domain containing protein, expressed |
TAIR PP10 |
AT5G15920.1 |
-2 |
4e-76 |
251 |
150/239 (63%) |
| Symbols: SMC5 | structural maintenance of chromosomes 5 | chr5:5196210-5199559 FORWARD LENGTH=1053 |