MLOC_27961 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.357146.318925.511815.65739
LEAShoots from the seedlings (10 cm shoot stage)5.454936.481755.562635.39851
INF1Young developing inflorescences (5mm)35.824235.365838.379833.5554
INF2Developing inflorescences (1-1.5 cm)60.314452.568546.476264.8819
ROORoots from the seedlings (10 cm shoot stage)2.617873.972222.656565.03082
NODDeveloping tillers at six leaf stage, 3rd internode0.5627891.211433.476645.91468
CAR5Developing grain, bracts removed (5 DPA)12.94258.6445212.853512.4157
CAR15Developing grain, bracts removed (15 DPA)6.224763.599234.4381312.1455



CDS Structure of MLOC_27961






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27961.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27961.1CUST_11935_PI427708083AvailableAvailablecontig_187838 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g51790.2 -2 5e-100 318 193/265 (73%) 13105.m05601 protein RecF/RecN/SMC N terminal domain containing protein, expressed
TAIR PP10 AT5G15920.1 -2 4e-76 251 150/239 (63%) | Symbols: SMC5 | structural maintenance of chromosomes 5 | chr5:5196210-5199559 FORWARD LENGTH=1053