MLOC_27939 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)00.8854870.3422840.427952
INF1Young developing inflorescences (5mm)00.23861500.131045
INF2Developing inflorescences (1-1.5 cm)00.15568600.175549
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.2265040.1751770.5440420.57867
CAR5Developing grain, bracts removed (5 DPA)00.38406500.321891
CAR15Developing grain, bracts removed (15 DPA)0.7373340.25047601.44785



CDS Structure of MLOC_27939






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27939.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27939.1CUST_11934_PI427708083AvailableAvailablecontig_1875501 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g27840.2 -2 4e-12 65 40/51 (78%) 13108.m02871 protein phosphoenolpyruvate carboxylase, putative, expressed
TAIR PP10 AT3G14940.1 -2 3e-12 64 40/51 (78%) | Symbols: ATPPC3, PPC3 | phosphoenolpyruvate carboxylase 3 | chr3:5025584-5029476 FORWARD LENGTH=968