MLOC_2788 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 18.9141 | 16.0727 | 15.5681 | 17.8528 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 19.3325 | 18.8561 | 18.8552 | 17.3701 |
| INF1 | Young developing inflorescences (5mm) | 16.4446 | 21.6611 | 20.6478 | 17.2899 |
| INF2 | Developing inflorescences (1-1.5 cm) | 22.3527 | 22.2116 | 25.0977 | 25.665 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 26.1759 | 26.5158 | 24.5195 | 35.1272 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 63.0463 | 68.8855 | 103.42 | 261.641 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 5.80031 | 7.15827 | 6.6455 | 6.78246 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 6.0219 | 4.99229 | 5.63396 | 12.9789 |
CDS Structure of MLOC_2788
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_2788.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g05280.1 |
-1 |
2e-124 |
364 |
183/208 (88%) |
13103.m00555 protein ras-related protein, putative, expressed |
| TAIR PP10 |
AT5G03530.1 |
-1 |
1e-97 |
295 |
149/210 (71%) |
| Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RAB GTPase homolog C2A | chr5:885741-887061 REVERSE LENGTH=210 |
