MLOC_27860 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains03.3775404.66069
LEAShoots from the seedlings (10 cm shoot stage)2.478372.676210.7908571.53467
INF1Young developing inflorescences (5mm)00.9245640.5599580.521203
INF2Developing inflorescences (1-1.5 cm)0.7450152.746031.461331.84903
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode2.783163.495942.457929.25411
CAR5Developing grain, bracts removed (5 DPA)3.328262.599321.004672.12748
CAR15Developing grain, bracts removed (15 DPA)0.8887544.255223.316545.50981



CDS Structure of MLOC_27860






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27860.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27860.2CUST_4005_PI427708083AvailableAvailablecontig_186924 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g50216.1 -3 7e-15 68 28/32 (88%) 13104.m05145 protein SNARE associated Golgi protein, putative, expressed
TAIR PP10 AT4G17790.1 -3 1e-11 58 25/30 (83%) SNARE associated Golgi protein family | chr4:9891425-9892675 FORWARD LENGTH=264