MLOC_27830 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.43656.72346.485717.08198
LEAShoots from the seedlings (10 cm shoot stage)5.5679811.110217.40088.72598
INF1Young developing inflorescences (5mm)8.228929.56314.17377.52504
INF2Developing inflorescences (1-1.5 cm)11.928213.736215.974613.283
ROORoots from the seedlings (10 cm shoot stage)13.02511.925214.568913.2621
NODDeveloping tillers at six leaf stage, 3rd internode21.823320.23998.184456.6723
CAR5Developing grain, bracts removed (5 DPA)4.886554.687474.479434.02423
CAR15Developing grain, bracts removed (15 DPA)1.198010.6593770.5867181.87489



CDS Structure of MLOC_27830






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27830.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27830.1CUST_4001_PI427708083AvailableAvailablecontig_186665 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g12530.1 +2 8e-25 103 48/51 (94%) 13103.m01434 protein cation efflux family protein, putative, expressed
TAIR PP10 AT3G58060.1 +2 1e-24 102 47/51 (92%) Cation efflux family protein | chr3:21497778-21499676 REVERSE LENGTH=411