morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_27824

Gene IDMLOC_27824
Source Contig contig_1866405

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_27824 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	1.2282	4.80151	3.27849	0
LEA	Shoots from the seedlings (10 cm shoot stage)	0.978392	2.96307	3.29772	0
INF1	Young developing inflorescences (5mm)	5.8695	5.37627	12.4457	0
INF2	Developing inflorescences (1-1.5 cm)	12.4392	18.3799	9.06661	0
ROO	Roots from the seedlings (10 cm shoot stage)	0	3.9114	7.14717	0
NOD	Developing tillers at six leaf stage, 3rd internode	4.50775	10.2329	8.72424	0
CAR5	Developing grain, bracts removed (5 DPA)	8.35134	13.9042	9.30112	0
CAR15	Developing grain, bracts removed (15 DPA)	7.85873	3.33643	2.39084	0

CDS Structure of MLOC_27824

Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by AK358750

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK358750	CUST_14084_PI427708083	None	None	None
MLOC_25522.1	None	Available	None	contig_1697118 (Not mapped)
MLOC_27824.1	None	Available	None	contig_1866405 (Mapped)
MLOC_29989.1	None	Available	None	contig_2054947 (Not mapped)
MLOC_30097.1	None	Available	None	contig_2064798 (Not mapped)
MLOC_30643.1	None	Available	None	contig_211603 (Mapped)
MLOC_35260.2	None	Available	None	contig_2468592 (Not mapped)
MLOC_35643.1	None	Available	None	contig_2511155 (Not mapped)
MLOC_41647.1	None	Available	Available	contig_2599177 (Mapped)
MLOC_50720.1	None	Available	None	contig_365103 (Mapped)
MLOC_69790.1	None	Available	None	contig_56955 (Mapped)
MLOC_77620.1	None	Available	None	contig_764274 (Not mapped)
MLOC_79519.1	None	Available	None	contig_854122 (Not mapped)
MLOC_8396.1	None	Available	None	contig_1424649 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-