MLOC_27639 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4598135.114772.663422.88643
LEAShoots from the seedlings (10 cm shoot stage)2.789754.862882.204882.68219
INF1Young developing inflorescences (5mm)7.033076.825666.991425.40601
INF2Developing inflorescences (1-1.5 cm)7.405027.637114.32866.99515
ROORoots from the seedlings (10 cm shoot stage)1.053061.352611.729721.52243
NODDeveloping tillers at six leaf stage, 3rd internode0.7517670.9528351.68313.18629
CAR5Developing grain, bracts removed (5 DPA)2.500993.619422.473052.49907
CAR15Developing grain, bracts removed (15 DPA)1.303930.5696411.654452.29805



CDS Structure of MLOC_27639






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27639.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27639.3CUST_11926_PI427708083AvailableAvailablecontig_184946 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g20090.1 +3 6e-33 125 55/66 (83%) 13106.m02146 protein NUP155, putative, expressed
TAIR PP10 AT1G14850.1 +3 7e-24 99 45/73 (62%) | Symbols: NUP155 | nucleoporin 155 | chr1:5116921-5123259 REVERSE LENGTH=1464