morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_27559

Gene IDMLOC_27559
Source Contig contig_1843194

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

morexGenes

Links

MLOC_27559 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	2.98473	3.63745	4.65114	0
LEA	Shoots from the seedlings (10 cm shoot stage)	3.13211	2.02882	2.43023	0
INF1	Young developing inflorescences (5mm)	4.98361	5.71147	8.26576	0
INF2	Developing inflorescences (1-1.5 cm)	10.6194	11.5648	10.0246	0
ROO	Roots from the seedlings (10 cm shoot stage)	1.07931	1.53864	1.04253	0
NOD	Developing tillers at six leaf stage, 3rd internode	1.63223	3.95925	3.98153	0
CAR5	Developing grain, bracts removed (5 DPA)	7.73573	7.10636	9.15961	0
CAR15	Developing grain, bracts removed (15 DPA)	2.8772	1.77941	2.22067	0

CDS Structure of MLOC_27559

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK372440

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK372440	CUST_25642_PI427708080	None	None	None
MLOC_1019.1	None	Available	None	contig_1085557 (Not mapped)
MLOC_24100.1	None	Available	None	contig_1636694 (Mapped)
MLOC_27107.2	None	Available	None	contig_180696 (Not mapped)
MLOC_27559.1	None	Available	None	contig_1843194 (Mapped)
MLOC_29015.1	None	Available	Available	contig_1966601 (Mapped)
MLOC_33706.1	None	Available	None	contig_239659 (Mapped)
MLOC_34133.1	None	Available	None	contig_242538 (Mapped)
MLOC_34154.1	None	Available	None	contig_242618 (Not mapped)
MLOC_41166.1	None	Available	None	contig_2575058 (Mapped)
MLOC_41183.1	None	Available	None	contig_2575568 (Mapped)
MLOC_41235.1	None	Available	None	contig_2578728 (Mapped)
MLOC_41633.1	None	Available	None	contig_2598338 (Not mapped)
MLOC_47987.1	None	Available	None	contig_315801 (Not mapped)
MLOC_49862.1	None	Available	None	contig_349776 (Not mapped)
MLOC_50618.1	None	Available	None	contig_363201 (Not mapped)
MLOC_60770.1	None	Available	None	contig_44760 (Mapped)
MLOC_8482.1	None	Available	None	contig_143367 (Mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-