MLOC_27545 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.426125.36227.166628.6792
LEAShoots from the seedlings (10 cm shoot stage)32.673722.56713.510621.6684
INF1Young developing inflorescences (5mm)16.858219.518219.458416.5598
INF2Developing inflorescences (1-1.5 cm)11.670115.065512.958715.7595
ROORoots from the seedlings (10 cm shoot stage)12.383311.484710.872817.4015
NODDeveloping tillers at six leaf stage, 3rd internode6.046685.353036.28622.1186
CAR5Developing grain, bracts removed (5 DPA)21.630619.993123.106321.9313
CAR15Developing grain, bracts removed (15 DPA)8.688159.553236.1767421.6828



CDS Structure of MLOC_27545






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27545.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27545.1CUST_11923_PI427708083AvailableAvailablecontig_184164 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g50030.1 -3 4e-39 140 66/74 (89%) 13101.m05207 protein CPuORF25 - conserved peptide uORF-containing transcript, expressed
TAIR PP10 AT1G48600.1 -3 2e-33 124 56/74 (76%) | Symbols: PMEAMT, AtPMEAMT | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:17966448-17969077 FORWARD LENGTH=475