MLOC_27544 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains01.773482.574592.94764
LEAShoots from the seedlings (10 cm shoot stage)03.191743.041834.09863
INF1Young developing inflorescences (5mm)03.2577704.03858
INF2Developing inflorescences (1-1.5 cm)4.3546202.773614.12052
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.6541390.9138260.8855293.29949
CAR5Developing grain, bracts removed (5 DPA)0.9222410.8609962.726852.01199
CAR15Developing grain, bracts removed (15 DPA)00.7484741.027994.44285



CDS Structure of MLOC_27544






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27544.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27544.1CUST_3965_PI427708083AvailableAvailablecontig_184140 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g01400.1 -2 6e-11 58 24/26 (92%) 13106.m00042 protein glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed
TAIR PP10 AT3G48110.1 -2 9e-11 57 23/26 (88%) | Symbols: EDD1, EDD | glycine-tRNA ligases | chr3:17763111-17770964 FORWARD LENGTH=1067