morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_27517

Gene IDMLOC_27517
Source Contig contig_1838674

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

morexGenes

Links

MLOC_27517 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	0.472594	0.693584	0.315448	0
LEA	Shoots from the seedlings (10 cm shoot stage)	0.383615	0.190603	0.297503	0
INF1	Young developing inflorescences (5mm)	0.960637	0.950199	0.403623	0
INF2	Developing inflorescences (1-1.5 cm)	0.874752	2.63756	1.10455	0
ROO	Roots from the seedlings (10 cm shoot stage)	0	0.409958	0	0
NOD	Developing tillers at six leaf stage, 3rd internode	0.200943	0.319564	0.474381	0
CAR5	Developing grain, bracts removed (5 DPA)	0.191877	0.17316	0.108549	0
CAR15	Developing grain, bracts removed (15 DPA)	0.659946	0.113414	0.165292	0

CDS Structure of MLOC_27517

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK360303

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK360303	CUST_24313_PI427708080	None	None	None
MLOC_1524.1	None	Available	None	contig_11350 (Mapped)
MLOC_233.1	None	Available	None	contig_1015798 (Not mapped)
MLOC_27517.1	None	Available	None	contig_1838674 (Mapped)
MLOC_27812.1	None	Available	None	contig_1864852 (Mapped)
MLOC_28444.1	None	Available	None	contig_1918442 (Not mapped)
MLOC_28663.2	None	Available	None	contig_1938399 (Not mapped)
MLOC_29384.2	None	Available	Available	contig_200035 (Not mapped)
MLOC_33185.1	None	Available	None	contig_2351033 (Not mapped)
MLOC_33760.1	None	Available	None	contig_240086 (Mapped)
MLOC_3859.1	None	Available	None	contig_134006 (Not mapped)
MLOC_5227.1	None	Available	None	contig_1360356 (Not mapped)
MLOC_6140.1	None	Available	None	contig_1371096 (Not mapped)
MLOC_80678.1	None	Available	None	contig_921203 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-