MLOC_27504 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.2310111.853811.282612.1791
LEAShoots from the seedlings (10 cm shoot stage)10.79954.969966.727896.29969
INF1Young developing inflorescences (5mm)18.910121.114220.820619.2984
INF2Developing inflorescences (1-1.5 cm)28.486723.8427.789531.2894
ROORoots from the seedlings (10 cm shoot stage)4.882597.20939.474838.76709
NODDeveloping tillers at six leaf stage, 3rd internode18.466317.853814.310247.5993
CAR5Developing grain, bracts removed (5 DPA)18.033517.024416.341318.1638
CAR15Developing grain, bracts removed (15 DPA)5.957224.590127.1041315.1899



CDS Structure of MLOC_27504






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27504.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27504.3CUST_17620_PI427708080AvailableAvailablecontig_183776 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g43194.1 -2 1e-56 108 54/69 (78%) 13102.m04795 protein aldehyde dehydrogenase, putative, expressed
TAIR PP10 AT4G36250.1 -3 3e-41 87 42/85 (49%) | Symbols: ALDH3F1 | aldehyde dehydrogenase 3F1 | chr4:17151029-17153381 FORWARD LENGTH=484