MLOC_27480 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0.970391.822320.9905122.62757
INF1Young developing inflorescences (5mm)0000.438563
INF2Developing inflorescences (1-1.5 cm)00.146550.1996280.354226
ROORoots from the seedlings (10 cm shoot stage)000.5873010.515182
NODDeveloping tillers at six leaf stage, 3rd internode0.4573540.2026340.9224992.48727
CAR5Developing grain, bracts removed (5 DPA)0.1857640.34475200.388062
CAR15Developing grain, bracts removed (15 DPA)00.19810400.974723



CDS Structure of MLOC_27480






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27480.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27480.1CUST_11920_PI427708083AvailableAvailablecontig_1835597 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g23180.1 +3 5e-41 142 72/114 (63%) 13112.m02355 protein 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed
TAIR PP10 AT1G09340.1 +3 2e-38 134 67/114 (59%) | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA binding | chr1:3015473-3018035 FORWARD LENGTH=378