MLOC_27353 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.503637.945759.095337.6325
LEAShoots from the seedlings (10 cm shoot stage)11.105410.544612.40468.72356
INF1Young developing inflorescences (5mm)8.256949.0870912.40087.08675
INF2Developing inflorescences (1-1.5 cm)14.781312.698812.722413.6901
ROORoots from the seedlings (10 cm shoot stage)10.70769.49026.88310.252
NODDeveloping tillers at six leaf stage, 3rd internode7.4308313.812711.38737.1332
CAR5Developing grain, bracts removed (5 DPA)9.4776210.797510.81599.23366
CAR15Developing grain, bracts removed (15 DPA)3.935644.301314.40838.63181



CDS Structure of MLOC_27353






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27353.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27353.1CUST_3942_PI427708083AvailableAvailablecontig_18249 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g37520.1 +3 3e-39 143 71/73 (97%) 13111.m03672 protein BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed
TAIR PP10 AT4G02680.1 +3 2e-34 129 61/73 (84%) | Symbols: EOL1 | ETO1-like 1 | chr4:1181202-1184328 REVERSE LENGTH=888