MLOC_27348 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8552540.71701900.910602
LEAShoots from the seedlings (10 cm shoot stage)1.331253.3653301.84713
INF1Young developing inflorescences (5mm)0.7399400.4539670.642248
INF2Developing inflorescences (1-1.5 cm)0.8975510.8189920.8156461.11205
ROORoots from the seedlings (10 cm shoot stage)00.7732961.277651.50518
NODDeveloping tillers at six leaf stage, 3rd internode0.9737262.287142.848346.92905
CAR5Developing grain, bracts removed (5 DPA)0.3928131.039381.259270.779189
CAR15Developing grain, bracts removed (15 DPA)1.169630.40573602.4641



CDS Structure of MLOC_27348






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27348.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27348.1CUST_3941_PI427708083AvailableAvailablecontig_1824395 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g06820.2 -2 3e-34 124 57/64 (89%) 13107.m00657 protein serine/threonine-protein kinase RIO-like, putative, expressed
TAIR PP10 AT5G37350.2 -2 6e-36 127 58/64 (91%) Serine/threonine-protein kinase Rio1 | chr5:14793837-14795828 FORWARD LENGTH=385