- Predicted Gene MLOC_27317
MLOC_27317 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 11.0328 | 10.2603 | 8.35242 | 7.76009 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 9.50179 | 6.1648 | 6.6615 | 5.23658 |
INF1 | Young developing inflorescences (5mm) | 15.3917 | 15.7252 | 15.0155 | 9.64093 |
INF2 | Developing inflorescences (1-1.5 cm) | 12.0173 | 13.6771 | 13.8203 | 11.1022 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.60956 | 10.0683 | 9.06112 | 8.43771 |
NOD | Developing tillers at six leaf stage, 3rd internode | 18.6694 | 21.1281 | 16.031 | 59.3991 |
CAR5 | Developing grain, bracts removed (5 DPA) | 10.2442 | 10.7245 | 12.3395 | 7.98952 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.06375 | 3.59127 | 4.10553 | 5.52723 |
CDS Structure of MLOC_27317
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_27317.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g53720.1 |
+2 |
3e-71 |
245 |
124/166 (75%) |
13103.m05873 protein SRPK4, putative, expressed |
TAIR PP10 |
AT3G53030.1 |
+2 |
4e-52 |
190 |
92/157 (59%) |
| Symbols: SRPK4 | ser/arg-rich protein kinase 4 | chr3:19662412-19664362 FORWARD LENGTH=529 |