MLOC_27317 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.032810.26038.352427.76009
LEAShoots from the seedlings (10 cm shoot stage)9.501796.16486.66155.23658
INF1Young developing inflorescences (5mm)15.391715.725215.01559.64093
INF2Developing inflorescences (1-1.5 cm)12.017313.677113.820311.1022
ROORoots from the seedlings (10 cm shoot stage)6.6095610.06839.061128.43771
NODDeveloping tillers at six leaf stage, 3rd internode18.669421.128116.03159.3991
CAR5Developing grain, bracts removed (5 DPA)10.244210.724512.33957.98952
CAR15Developing grain, bracts removed (15 DPA)3.063753.591274.105535.52723



CDS Structure of MLOC_27317






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27317.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27317.3CUST_11912_PI427708083AvailableAvailablecontig_182159 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g53720.1 +2 3e-71 245 124/166 (75%) 13103.m05873 protein SRPK4, putative, expressed
TAIR PP10 AT3G53030.1 +2 4e-52 190 92/157 (59%) | Symbols: SRPK4 | ser/arg-rich protein kinase 4 | chr3:19662412-19664362 FORWARD LENGTH=529