MLOC_27244 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains37.403719.53221.861727.0082
LEAShoots from the seedlings (10 cm shoot stage)15.8234.135818.995839.23685
INF1Young developing inflorescences (5mm)66.342967.877559.803659.1507
INF2Developing inflorescences (1-1.5 cm)47.830575.7580.772276.7281
ROORoots from the seedlings (10 cm shoot stage)35.875730.722327.054236.8469
NODDeveloping tillers at six leaf stage, 3rd internode5.037145.7986110.156724.5917
CAR5Developing grain, bracts removed (5 DPA)38.103438.553440.376340.4213
CAR15Developing grain, bracts removed (15 DPA)9.287418.7399411.309922.4992



CDS Structure of MLOC_27244






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27244.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27244.1CUST_11906_PI427708083AvailableAvailablecontig_1816557 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g38300.1 +1 4e-34 124 64/64 (100%) 13108.m04061 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G22880.1 +1 3e-33 121 61/64 (95%) | Symbols: H2B, HTB2 | histone B2 | chr5:7652130-7652567 REVERSE LENGTH=145