MLOC_27137 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.09423010.33138900.377902
LEAShoots from the seedlings (10 cm shoot stage)0.1537130.1570440.6300620.430245
INF1Young developing inflorescences (5mm)0.08504590.4287920.10750.255053
INF2Developing inflorescences (1-1.5 cm)0.6983980.06362890.2823040.500993
ROORoots from the seedlings (10 cm shoot stage)00.087858800.486531
NODDeveloping tillers at six leaf stage, 3rd internode0.2324290.313390.171771.451
CAR5Developing grain, bracts removed (5 DPA)0.08410120.075537200.170849
CAR15Developing grain, bracts removed (15 DPA)0.09084250.09276960.1348210.285363



CDS Structure of MLOC_27137






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27137.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27137.1CUST_11902_PI427708083AvailableAvailablecontig_180893 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g31460.1 -2 4e-38 140 68/104 (65%) 13108.m03262 protein GTPase of unknown function domain containing protein, putative, expressed
TAIR PP10 AT1G78010.1 -2 5e-35 91 46/87 (53%) tRNA modification GTPase, putative | chr1:29333535-29336297 FORWARD LENGTH=560