MLOC_27071 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.1400140.4312190.197336
LEAShoots from the seedlings (10 cm shoot stage)0.258080.2636810.4394040.286219
INF1Young developing inflorescences (5mm)00.1396220.1761230.23102
INF2Developing inflorescences (1-1.5 cm)0.224250.5251050.5926510.719326
ROORoots from the seedlings (10 cm shoot stage)0.807607000.284821
NODDeveloping tillers at six leaf stage, 3rd internode0.380220.3065540.2092461.80184
CAR5Developing grain, bracts removed (5 DPA)0.2740390.7434520.30520.500808
CAR15Developing grain, bracts removed (15 DPA)0.30591400.4467390.691763



CDS Structure of MLOC_27071






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_27071.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_27071.1CUST_11898_PI427708083AvailableAvailablecontig_180388 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g05880.1 -2 5e-20 85 40/46 (87%) 13106.m00583 protein profilin domain containing protein, expressed
TAIR PP10 AT2G19770.1 -2 3e-18 79 36/46 (78%) | Symbols: PRF5 | profilin 5 | chr2:8519885-8521119 REVERSE LENGTH=134