MLOC_26974 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.824544.808169.024884.94287
LEAShoots from the seedlings (10 cm shoot stage)5.798697.283583.911753.56148
INF1Young developing inflorescences (5mm)15.199220.020822.779810.9709
INF2Developing inflorescences (1-1.5 cm)34.229335.373840.781629.2939
ROORoots from the seedlings (10 cm shoot stage)10.27638.582159.837337.59316
NODDeveloping tillers at six leaf stage, 3rd internode4.931823.29613.275318.10593
CAR5Developing grain, bracts removed (5 DPA)22.744122.871728.627916.2912
CAR15Developing grain, bracts removed (15 DPA)12.153712.070912.811919.9899



CDS Structure of MLOC_26974






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_26974.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_26974.1CUST_11895_PI427708083AvailableAvailablecontig_179459 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g38430.1 -2 1e-48 166 78/94 (83%) 13112.m03958 protein SR repressor protein, putative, expressed
TAIR PP10 AT3G55460.1 -2 2e-32 122 61/94 (65%) | Symbols: SCL30, At-SCL30 | SC35-like splicing factor 30 | chr3:20561024-20563502 FORWARD LENGTH=262