MLOC_26778 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.57377.7454512.90837.40167
LEAShoots from the seedlings (10 cm shoot stage)7.941987.8104514.0115.55952
INF1Young developing inflorescences (5mm)7.852411.611810.90865.13587
INF2Developing inflorescences (1-1.5 cm)6.997688.542147.545535.68567
ROORoots from the seedlings (10 cm shoot stage)23.42318.590389.853179.55864
NODDeveloping tillers at six leaf stage, 3rd internode8.2522310.111114.849924.3524
CAR5Developing grain, bracts removed (5 DPA)4.830025.41934.846553.08609
CAR15Developing grain, bracts removed (15 DPA)1.231551.416291.512711.81359



CDS Structure of MLOC_26778






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_26778.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_26778.1CUST_11887_PI427708083AvailableAvailablecontig_177934 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g01994.1 +2 1e-23 97 45/55 (82%) 13105.m00149 protein rab5-interacting protein like, putative, expressed
TAIR PP10 AT5G59410.1 +2 3e-21 90 43/55 (78%) Rab5-interacting family protein | chr5:23959761-23960730 REVERSE LENGTH=130