- Predicted Gene MLOC_26778
MLOC_26778 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 14.5737 | 7.74545 | 12.9083 | 7.40167 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 7.94198 | 7.81045 | 14.011 | 5.55952 |
INF1 | Young developing inflorescences (5mm) | 7.8524 | 11.6118 | 10.9086 | 5.13587 |
INF2 | Developing inflorescences (1-1.5 cm) | 6.99768 | 8.54214 | 7.54553 | 5.68567 |
ROO | Roots from the seedlings (10 cm shoot stage) | 23.4231 | 8.59038 | 9.85317 | 9.55864 |
NOD | Developing tillers at six leaf stage, 3rd internode | 8.25223 | 10.1111 | 14.8499 | 24.3524 |
CAR5 | Developing grain, bracts removed (5 DPA) | 4.83002 | 5.4193 | 4.84655 | 3.08609 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.23155 | 1.41629 | 1.51271 | 1.81359 |
CDS Structure of MLOC_26778
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_26778.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g01994.1 |
+2 |
1e-23 |
97 |
45/55 (82%) |
13105.m00149 protein rab5-interacting protein like, putative, expressed |
TAIR PP10 |
AT5G59410.1 |
+2 |
3e-21 |
90 |
43/55 (78%) |
Rab5-interacting family protein | chr5:23959761-23960730 REVERSE LENGTH=130 |