MLOC_26710 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.081498.952843.510676.61648
LEAShoots from the seedlings (10 cm shoot stage)18.281111.47195.097669.22142
INF1Young developing inflorescences (5mm)5.054353.000953.532382.87731
INF2Developing inflorescences (1-1.5 cm)6.920964.814335.660635.61457
ROORoots from the seedlings (10 cm shoot stage)17.386321.98251.294323.6927
NODDeveloping tillers at six leaf stage, 3rd internode0.1918320.4226760.1733731.04001
CAR5Developing grain, bracts removed (5 DPA)2.56392.073662.24521.91948
CAR15Developing grain, bracts removed (15 DPA)4.073083.344663.711157.34227



CDS Structure of MLOC_26710






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_26710.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_26710.1CUST_3854_PI427708083AvailableAvailablecontig_177434 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g33960.1 -2 2e-61 223 113/118 (96%) 13101.m03422 protein transposon protein, putative, CACTA, En/Spm sub-class
TAIR PP10 AT1G77750.1 -3 9e-11 62 36/88 (41%) Ribosomal protein S13/S18 family | chr1:29230346-29231490 REVERSE LENGTH=154