MLOC_26558 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains114.68187.3293100.4995.6145
LEAShoots from the seedlings (10 cm shoot stage)7.2528736.2521112.19240.4629
INF1Young developing inflorescences (5mm)0.1135180.02678760.0861280.0641691
INF2Developing inflorescences (1-1.5 cm)0.07208880.3026010.05748060.188317
ROORoots from the seedlings (10 cm shoot stage)70.007177.988643.948677.3768
NODDeveloping tillers at six leaf stage, 3rd internode3.207773.5202418.839417.4372
CAR5Developing grain, bracts removed (5 DPA)18.236216.5214.560416.0981
CAR15Developing grain, bracts removed (15 DPA)0.5573130.464180.6779321.37099



CDS Structure of MLOC_26558






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_26558.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364657NoneNoneNoneNone
MLOC_26558.1CUST_2071_PI427708080AvailableAvailablecontig_176404 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g71080.1 -2 2e-58 204 172/403 (43%) 13101.m07739 protein xylanase inhibitor, putative, expressed
TAIR PP10 AT1G03230.1 -2 6e-23 102 56/143 (39%) Eukaryotic aspartyl protease family protein | chr1:790110-791414 FORWARD LENGTH=434