MLOC_26547 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.5033510.41586.614758.03507
LEAShoots from the seedlings (10 cm shoot stage)116.522341.012305.131188.504
INF1Young developing inflorescences (5mm)24.26036.42443.123919.78713
INF2Developing inflorescences (1-1.5 cm)0.083285601.077690.429445
ROORoots from the seedlings (10 cm shoot stage)23.629316.69330.087420.4475
NODDeveloping tillers at six leaf stage, 3rd internode133.57926.893136.560580.9469
CAR5Developing grain, bracts removed (5 DPA)1.830460.6525190.3339540.878878
CAR15Developing grain, bracts removed (15 DPA)1.435950.9966850.4536312.4002



CDS Structure of MLOC_26547






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_26547.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_26547.1CUST_3841_PI427708083AvailableAvailablecontig_176327 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05680.1 -1 8e-35 128 65/77 (84%) 13105.m00599 protein 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed
TAIR PP10 AT1G77330.1 -1 1e-24 100 47/76 (62%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:29063215-29064447 REVERSE LENGTH=307