MLOC_26493 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6358630.3029360.3695970.378892
LEAShoots from the seedlings (10 cm shoot stage)0.44075600.2610530.24261
INF1Young developing inflorescences (5mm)0.1220960.121130.5229380.165485
INF2Developing inflorescences (1-1.5 cm)0.145720.1761130.1302240.155049
ROORoots from the seedlings (10 cm shoot stage)0.2152030.18904200.320162
NODDeveloping tillers at six leaf stage, 3rd internode0.1090610.3134220.6093171.09921
CAR5Developing grain, bracts removed (5 DPA)0.0573470.1043730.06483450.0663887
CAR15Developing grain, bracts removed (15 DPA)0.1323160.06730420.2927740.303589



CDS Structure of MLOC_26493






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_26493.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_26493.2CUST_11875_PI427708083AvailableAvailablecontig_176022 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g67850.1 +3 7e-35 131 69/92 (75%) 13101.m07379 protein zinc finger, RING-type, putative, expressed
TAIR PP10 AT1G24440.1 +3 1e-17 82 45/92 (49%) RING/U-box superfamily protein | chr1:8662340-8663777 FORWARD LENGTH=251