MLOC_2646 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5324751.303630.795020.96858
LEAShoots from the seedlings (10 cm shoot stage)1.094080.6095510.9321060.785905
INF1Young developing inflorescences (5mm)3.699473.416916.599614.13667
INF2Developing inflorescences (1-1.5 cm)6.477155.222935.946266.83311
ROORoots from the seedlings (10 cm shoot stage)0.2808280.6789381.379830.865823
NODDeveloping tillers at six leaf stage, 3rd internode0.361450.7403940.7866572.3608
CAR5Developing grain, bracts removed (5 DPA)3.090162.944853.469533.18687
CAR15Developing grain, bracts removed (15 DPA)2.108421.875392.005124.72318



CDS Structure of MLOC_2646






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_2646.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_2646.1CUST_3826_PI427708083AvailableAvailablecontig_123640 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g51790.2 +1 9e-90 295 153/187 (82%) 13105.m05601 protein RecF/RecN/SMC N terminal domain containing protein, expressed
TAIR PP10 AT5G15920.1 +1 3e-74 251 125/185 (68%) | Symbols: SMC5 | structural maintenance of chromosomes 5 | chr5:5196210-5199559 FORWARD LENGTH=1053