MLOC_2646 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.532475 | 1.30363 | 0.79502 | 0.96858 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.09408 | 0.609551 | 0.932106 | 0.785905 |
INF1 | Young developing inflorescences (5mm) | 3.69947 | 3.41691 | 6.59961 | 4.13667 |
INF2 | Developing inflorescences (1-1.5 cm) | 6.47715 | 5.22293 | 5.94626 | 6.83311 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.280828 | 0.678938 | 1.37983 | 0.865823 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.36145 | 0.740394 | 0.786657 | 2.3608 |
CAR5 | Developing grain, bracts removed (5 DPA) | 3.09016 | 2.94485 | 3.46953 | 3.18687 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.10842 | 1.87539 | 2.00512 | 4.72318 |
CDS Structure of MLOC_2646
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_2646.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g51790.2 |
+1 |
9e-90 |
295 |
153/187 (82%) |
13105.m05601 protein RecF/RecN/SMC N terminal domain containing protein, expressed |
TAIR PP10 |
AT5G15920.1 |
+1 |
3e-74 |
251 |
125/185 (68%) |
| Symbols: SMC5 | structural maintenance of chromosomes 5 | chr5:5196210-5199559 FORWARD LENGTH=1053 |