MLOC_26386 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.572420.674921.139316.8011
LEAShoots from the seedlings (10 cm shoot stage)16.927617.771116.369412.1578
INF1Young developing inflorescences (5mm)20.180120.980325.729314.0485
INF2Developing inflorescences (1-1.5 cm)26.102626.524924.668724.0816
ROORoots from the seedlings (10 cm shoot stage)16.585921.634322.538820.8792
NODDeveloping tillers at six leaf stage, 3rd internode35.969231.974131.23596.3404
CAR5Developing grain, bracts removed (5 DPA)19.735622.596124.077418.0136
CAR15Developing grain, bracts removed (15 DPA)8.162247.989219.7547514.8029



CDS Structure of MLOC_26386






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_26386.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_26386.1CUST_11868_PI427708083AvailableAvailablecontig_175258 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g46932.2 -1 4e-68 214 104/121 (86%) 13101.m04830 protein vacuolar protein-sorting-associated protein 25, putative, expressed
TAIR PP10 AT4G19003.1 -1 5e-55 181 83/120 (69%) | Symbols: VPS25 | E2F/DP family winged-helix DNA-binding domain | chr4:10407571-10408582 REVERSE LENGTH=179