MLOC_26350 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains109.05186.073786.48588.9295
LEAShoots from the seedlings (10 cm shoot stage)53.594736.490339.653633.4067
INF1Young developing inflorescences (5mm)148.496148.381127.713124.901
INF2Developing inflorescences (1-1.5 cm)104.382103.67489.1853115.063
ROORoots from the seedlings (10 cm shoot stage)78.159562.52161.673972.2534
NODDeveloping tillers at six leaf stage, 3rd internode6.758063.8239310.749912.8735
CAR5Developing grain, bracts removed (5 DPA)93.065790.630894.514596.2177
CAR15Developing grain, bracts removed (15 DPA)48.958252.276940.7006121.755



CDS Structure of MLOC_26350






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_26350.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_26350.1CUST_11865_PI427708083AvailableAvailablecontig_1750249 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g08440.2 +2 2e-18 81 39/43 (91%) 13103.m00971 protein ribosomal protein S2, putative, expressed
TAIR PP10 AT3G04770.2 +2 6e-14 67 29/41 (71%) | Symbols: RPSAb | 40s ribosomal protein SA B | chr3:1309544-1310846 REVERSE LENGTH=280