MLOC_26248 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.1305413.102912.266210.5938
LEAShoots from the seedlings (10 cm shoot stage)16.665714.68912.593211.9496
INF1Young developing inflorescences (5mm)17.355316.843314.790712.6557
INF2Developing inflorescences (1-1.5 cm)18.901118.438716.632417.9352
ROORoots from the seedlings (10 cm shoot stage)8.0335412.951611.587313.3537
NODDeveloping tillers at six leaf stage, 3rd internode9.1629711.212112.512736.5287
CAR5Developing grain, bracts removed (5 DPA)17.088215.591617.922414.2854
CAR15Developing grain, bracts removed (15 DPA)7.371425.370157.2765613.4682



CDS Structure of MLOC_26248






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_26248.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_26248.1CUST_10360_PI427708080AvailableAvailablecontig_174379 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g02930.2 -3 5e-85 276 141/188 (75%) 13110.m00202 protein helicase SEN1, putative, expressed
TAIR PP10 AT4G30100.1 -3 0.0 1143 608/913 (67%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:14714191-14719335 FORWARD LENGTH=1311