MLOC_26110 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains95.357473.416473.119784.397
LEAShoots from the seedlings (10 cm shoot stage)54.512643.791355.718345.2422
INF1Young developing inflorescences (5mm)44.627254.362254.383546.1972
INF2Developing inflorescences (1-1.5 cm)42.655457.106648.140258.235
ROORoots from the seedlings (10 cm shoot stage)103.60482.537867.2307109.531
NODDeveloping tillers at six leaf stage, 3rd internode84.468297.497576.9588308.719
CAR5Developing grain, bracts removed (5 DPA)68.210367.898462.178268.5751
CAR15Developing grain, bracts removed (15 DPA)13.483313.492313.560133.2335



CDS Structure of MLOC_26110






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_26110.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250250.1NoneNoneNoneNone
MLOC_26110.1CUST_2062_PI427708080AvailableAvailablecontig_173608 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g43690.1 +3 7e-129 373 187/203 (92%) 13102.m04853 protein ras-related protein, putative, expressed
TAIR PP10 AT1G02130.1 +3 5e-126 365 179/203 (88%) | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 | RAS 5 | chr1:400350-401788 REVERSE LENGTH=203