MLOC_25990 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.161070.04940160.06867350.088553
LEAShoots from the seedlings (10 cm shoot stage)5.24240.08970450.07962531.56049
INF1Young developing inflorescences (5mm)0.0845268000.0781719
INF2Developing inflorescences (1-1.5 cm)1.482981.808211.930512.24962
ROORoots from the seedlings (10 cm shoot stage)30.71058.101317.6776814.7901
NODDeveloping tillers at six leaf stage, 3rd internode0.40320.1238290.1207980.476876
CAR5Developing grain, bracts removed (5 DPA)0.7535581.783160.6261971.3839
CAR15Developing grain, bracts removed (15 DPA)92.0865103.93280.2071252.758



CDS Structure of MLOC_25990






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25990.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25990.1CUST_10339_PI427708080AvailableAvailablecontig_172684 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g04370.1 -2 5e-40 96 49/64 (77%) 13101.m00396 protein hsp20/alpha crystallin family protein, putative, expressed
TAIR PP10 AT5G59720.1 -1 4e-32 81 50/65 (77%) | Symbols: HSP18.2 | heat shock protein 18.2 | chr5:24062632-24063117 FORWARD LENGTH=161