MLOC_25934 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.300977.517504.15241
LEAShoots from the seedlings (10 cm shoot stage)5.5397302.938883.31356
INF1Young developing inflorescences (5mm)1.808763.725641.601571.29284
INF2Developing inflorescences (1-1.5 cm)2.83441.976261.738431.98529
ROORoots from the seedlings (10 cm shoot stage)4.969114.0087304.59686
NODDeveloping tillers at six leaf stage, 3rd internode8.891256.975286.0667713.519
CAR5Developing grain, bracts removed (5 DPA)1.111632.511691.9131.23465
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_25934






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25934.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25934.1CUST_11851_PI427708083AvailableAvailablecontig_17231 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g74330.1 -1 2e-18 80 36/38 (95%) 13101.m08124 protein pectinacetylesterase domain containing protein, expressed
TAIR PP10 AT3G09405.1 -1 3e-12 62 27/38 (71%) Pectinacetylesterase family protein | chr3:2895009-2897366 REVERSE LENGTH=409