MLOC_25908 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2128170.5274950.5301410.418049
LEAShoots from the seedlings (10 cm shoot stage)3.43428.394325.186744.31623
INF1Young developing inflorescences (5mm)00.09785260.1208430.0825879
INF2Developing inflorescences (1-1.5 cm)0.05219310.02423130.2876090.0937455
ROORoots from the seedlings (10 cm shoot stage)1.330571.635370.7670521.65688
NODDeveloping tillers at six leaf stage, 3rd internode0.05957380.003831300.0205238
CAR5Developing grain, bracts removed (5 DPA)1.5151.952041.892331.54869
CAR15Developing grain, bracts removed (15 DPA)9.913658.423473.9522917.444



CDS Structure of MLOC_25908






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25908.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25908.1CUST_11850_PI427708083AvailableAvailablecontig_172098 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g28410.1 -3 5e-94 301 146/219 (67%) 13108.m02934 protein retinal pigment epithelial membrane protein, expressed
TAIR PP10 AT3G63520.1 -3 3e-20 95 65/216 (30%) | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD LENGTH=538