MLOC_25808 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.130668000.0913122
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)15.510816.143712.566715.9057
CAR15Developing grain, bracts removed (15 DPA)0.7332310.7140240.7336531.91071



CDS Structure of MLOC_25808






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25808.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376154NoneNoneNoneNone
MLOC_25808.1CUST_2059_PI427708080AvailableAvailablecontig_171451 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g52190.1 +2 4e-28 117 107/380 (28%) 13101.m05459 protein aspartic proteinase nepenthesin precursor, putative
TAIR PP10 AT2G42980.1 +2 4e-22 100 105/383 (27%) Eukaryotic aspartyl protease family protein | chr2:17875005-17876588 REVERSE LENGTH=527